Appear to have been over-taxed after salary increase - Month 1 tax code or something esle?

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I got a salary increase in July which was backdated to February so the payslip I have just received in August is the first standard one on my new salary. Net pay was a bit less than I expected so I went through it and compared to an online salary calculator to compare. Usually this calculator is correct to within a couple of pounds or 2 and it has been in multiple jobs I've had, but this time it's saying I've been over-taxed around £60.
The net pay increase for a £3.5k raise is only coming in around £110 a month so I'm sure there is something up and on further inspection it appears that it's a Month 1 tax code. Could this be the cause and if so will it eventually rectify? I've looked up Month1codes and how they work and it doesn't seem to indicate that it's responsible but I may be missing something. Could the larger pay packet I received in July with backdated salary have thrown things off?
The net pay increase for a £3.5k raise is only coming in around £110 a month so I'm sure there is something up and on further inspection it appears that it's a Month 1 tax code. Could this be the cause and if so will it eventually rectify? I've looked up Month1codes and how they work and it doesn't seem to indicate that it's responsible but I may be missing something. Could the larger pay packet I received in July with backdated salary have thrown things off?
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The calculator I used got all other deductions right down to the penny more or less, but I was taxed £60 more.
Follow @molerat's suggestion and put the info into a calculator on a cumulative basis to see if you would better off insisting HMRC recalculate the code on a cumulative basis.
I got a letter to say the switch to 1058L code was due to the health insurance and it gave me a total on extra tax I'd owe for the year which was under £100 (would need to dig out the letter). According to calculators that code means I should pay £620 a month tax on my salary but I pay £680.
Thanks for all the replies, will require some number crunching! I know you can input information on this kind of thing on government gateway, would that help or just muddy the waters further?
I don't think it will muddy the waters. I'm retired and every year I'm allocated an incorrect tax code which means I pay some tax - even though my personal online account always advises that my income isn't high enough for me to be taxed. (But I'm okay, honestly!)
Every year I go onto the site to let them know that they have allocated the wrong code and are making me pay tax again. And every year they adjust the code and then the tax they've taken is refunded via my private pension very quickly. It's not dragged out and although it's a bit annoying that they still do this to me, it's very easily and quickly sorted.
So I'd say yes, do give it a go. Ask questions on there, that's what it's there for. And they do answer.
If not you won't have got the correct answer.
This is a simple but accurate calculator and you can do a single pay day on it using the week1/month1 option.
http://payecalculator.hmrc.gov.uk/PAYE0.aspx
The plot thickens though - went through my payslips and not only does my tax code seem to change almost monthly, but it is also on M1 most months. This is a terrible mess really, glad I've finally clicked.
I think a mix of the healthcare, pay rises in February and bonuses is causing it.
They cannot deduct more than 50% of your pay so if that was the case you would have an underpayment amount to put in that box.