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HMRC not refunding higher rate stamp duty

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When we bought our current house at the end of 2022 we were unable to sell our then main residence, so we had to let it out temporarily. This meant that we were caught for higher rate stamp duty (additional 3%) on our purchase.

In January this year we sold our former main residence and I applied for the repayment of the higher rate stamp duty that we paid (clearly I was well within the 3 year limit). HMRC replied fairly quickly and disagreed with the figure I had calculated. I replied with a very clear calculation explaining why their figure (considerably less) was wrong.

I have not heard from HMRC since then (more than 3 months), despite a chasing letter. What should I do now?

Recently HMRC charged me interest on unpaid tax following a tax return despite not having told me that I owed them anything. In view of the current high interest rates perhaps I should go for a Small Claims Action and seek interest on the unpaid refund? 

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